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projects [2020/07/03 11:02]
shyam [Biomedical Informatics Core, CTSI] 		projects [2021/06/14 17:33]
shyam
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 ===== Projects ===== ===== Projects =====
  
-==== Informatics Core, CTSI ====+==== Biomedical Informatics Core, CTSI ====
 {{ wiki:ctsi.png?300x0}} {{ wiki:ctsi.png?300x0}}
  
-The Informatics Core of the [[http://www.ctsi.pitt.edu/|Clinical and Translational Science Institute (CTSI)]] has established a research data warehouse; developed and deployed user-friendly, web-based informatics tools such as a Cohort Discovery Tool and a Computable Phenotype Library Tool; and is developing a secure data analytic environment.+The Biomedical Informatics Core of the [[http://www.ctsi.pitt.edu/|Clinical and Translational Science Institute (CTSI)]] has established a research data warehouse; developed and deployed user-friendly, web-based informatics tools such as a Cohort Discovery Tool and a Computable Phenotype Library Tool; and is developing a secure data analytic environment.
  
 This work is funded by grant [[https://projectreporter.nih.gov/project_info_description.cfm?aid=9260460|UL1 TR001857]] from NCATS, NIH. This work is funded by grant [[https://projectreporter.nih.gov/project_info_description.cfm?aid=9260460|UL1 TR001857]] from NCATS, NIH.
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 {{ wiki:allofuspa.png?200x0}} {{ wiki:allofuspa.png?200x0}}
  
-The University of Pittsburgh is [[https://projectreporter.nih.gov/project_info_details.cfm?aid=9228293|funded]] as one of the [[https://www.nih.gov/precision-medicine-initiative-cohort-program/healthcare-provider-organizations|Healthcare Provider Organizations]] for the national [[https://allofus.nih.gov/|All of Us Research Program]], which is a historic effort to gather data from 1 million people living in the United States. The goal of the program is to revolutionize how disease is prevented and treated based on individual differences in lifestyle, environment and genetics. The University of Pittsburgh's program, called the [[https://pacaresforusresearch.org/|All of Us Pennsylvania Research Program]], will enroll 120,000 participants.+The University of Pittsburgh is [[https://projectreporter.nih.gov/project_info_details.cfm?aid=9228293|funded]] as one of the [[https://www.nih.gov/precision-medicine-initiative-cohort-program/healthcare-provider-organizations|Healthcare Provider Organizations]] for the national [[https://allofus.nih.gov/|All of Us Research Program]], which is a historic effort to gather data from 1 million people living in the United States. The goal of the program is to revolutionize how disease is prevented and treated based on individual differences in lifestyle, environment and genetics. The University of Pittsburgh's program, called the [[https://pacaresforusresearch.org/|All of Us Pennsylvania]] Research Program, will enroll 120,000 participants.
  
 This work is funded by grant [[https://projectreporter.nih.gov/project_info_description.cfm?aid=9228293|UG3 OD023153]] from the Office of the Director, NIH. This work is funded by grant [[https://projectreporter.nih.gov/project_info_description.cfm?aid=9228293|UG3 OD023153]] from the Office of the Director, NIH.
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 {{ wiki:path_transparent.png?250x0}} {{ wiki:path_transparent.png?250x0}}
  
-[[http://www.pathnetwork.org/|PaTH]] is a Patient Centered Outcomes Research Institute (PCORI) Clinical Data Research Network project which is focused on building a Learning Health System (LHS) for the Mid-Atlantic region. It is comprised of Geisinger Health System, Johns Hopkins University, Johns Hopkins Health System, Penn State College of Medicine, Penn State Milton S. Hershey Medical Center, Temple Health System, Lewis Katz School of Medicine at Temple University, the University of Pittsburgh, UPMC, the University of Utah, and University of Utah Health Care. the University of Pittsburgh leads the informatics component of PaTH.+[[http://www.pathnetwork.org/|PaTH]] is a Patient Centered Outcomes Research Institute (PCORI) Clinical Data Research Network project which is focused on building a Learning Health System (LHS) for the Mid-Atlantic region. It is comprised of University of Pittsburgh / UPMC, Penn State, Temple University, John Hopkins University, the Ohio State University and University of Michigan. The University of Pittsburgh leads the informatics component of PaTH.
  
 This work is funded by grant [[http://www.pcori.org/research-results/2015/path-towards-learning-health-system-path|CDRN 1306-04912]] from PCORI. This work is funded by grant [[http://www.pcori.org/research-results/2015/path-towards-learning-health-system-path|CDRN 1306-04912]] from PCORI.
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-==== National Mesothelioma Virtual Bank (NMVB) ==== +==== Genomic Information Commons (GIC) ====
-{{ wiki:nmvb.png?350x0}}+
  
-The [[http://mesotissue.org/|National Mesothelioma Virtual Bank (NMVB)]] is a virtual biospecimen registry designed to support and facilitate basic science, clinical, and translational research that will advance understanding of mesothelioma pathophysiology with the goal of expediting the discovery of preventive measures, novel therapeutic interventions, and ultimately, cures for mesothelioma. The current participants in the virtual bank are University of Pittsburgh, University of Pennsylvania, NYU Langone Medical Center, Roswell Park Cancer Institute and University of Maryland.+The Genomic Information Commons (GIC) is a federated network that is developing two portals for researchers: (A) Prep-to- research portal. Investigators can execute genotype, phenotype, or combined genotype/phenotype queries, and receive aggregate results in real time; and (B) Study portal. With proper approvals, patient-level data are readily transferred to a cloud-hosted environment.
  
-This work is funded by grant [[https://projectreporter.nih.gov/project_info_description.cfm?aid=8931767|U24 OH010873]] from NIOSH, NIH.+This work is funded by a [[https://projectreporter.nih.gov/project_info_description.cfm?aid=9818382|U01 grant]] from the NCATS, NIH.
  
  
  
-==== The TIES Cancer Research Network (TCRN) ==== +==== National Mesothelioma Virtual Bank (NMVB) ==== 
-{{ wiki:tcrn.png?200x0}} +{{ wiki:nmvb.png?350x0}}
- +
-The [[http://ties.dbmi.pitt.edu/|Text Information Extraction System (TIES) Cancer Research Network]]  is a federated network of clinical reports and biospecimen registry to support and facilitate basic science, clinical, and translational research in cancer. TIES uses a sophisticated concept based search to retrieve pathology and radiology reports containing concepts of interest.  Plans include enabling virtual slides and tissue microarray creation. The current participants in the network are University of Pittsburgh, University of Pennsylvania, Augusta University, Roswell Park Cancer Institute, Thomas Jefferson University and Stony Brook University.  +
- +
-This work is funded by grant [[https://projectreporter.nih.gov/project_info_description.cfm?aid=9324915|U24 CA180921]] from NCI, NIH. +
- +
- +
-==== The Pittsburgh Genome Resource Repository (PGRR) ==== +
-{{ wiki:pgrr_transparent.png?250x0}} +
- +
-The [[http://www.pgrr.pitt.edu/|Pittsburgh Genome Resource Repository (PGRR)]] provides data management and computing infrastructure to support investigation using The Cancer Genome Atlas (TCGA). TCGA is a “comprehensive and coordinated effort to accelerate the understanding of the molecular basis of cancer through the application of genome analysis technologies, including large-scale genome sequencing”, and is funded by the National Cancer Institute. PGRR processes data and metadata available from TCGA to provide a Pitt-specific ‘snapshot’ of the data and tools for use of this data in a secured environment. +
- +
-This work is funded by the [[http://www.ipm.pitt.edu//|Institute for Personalized Medicine (IPM)]] and the [[https://upci.upmc.edu/|University of Pittsburgh Cancer Institute (UPCI)]]. +
- +
- +
- +
-==== Genomics Research and Innovation Network (GRIN) ==== +
- +
-Genomics Research and Innovation Network (GRIN) is a federated network that is developing two portals for researchers: (A) Prep-to- research portal. Investigators can execute genotype, phenotype, or combined genotype/phenotype queries, and receive aggregate results in real time; and (B) Study portal. With proper approvals, patient-level data are readily transferred to a cloud-hosted environment. +
- +
-This work is funded by a [[https://projectreporter.nih.gov/project_info_description.cfm?aid=9818382|U01 grant]] from the NCATS, NIH. +
- +
  
 +The [[http://mesotissue.org/|National Mesothelioma Virtual Bank (NMVB)]] is a virtual biospecimen registry designed to support and facilitate basic science, clinical, and translational research that will advance understanding of mesothelioma pathophysiology with the goal of expediting the discovery of preventive measures, novel therapeutic interventions, and ultimately, cures for mesothelioma. The current participants in the virtual bank are University of Pittsburgh, University of Pennsylvania, NYU Langone Medical Center, Roswell Park Cancer Institute and University of Maryland.
  
 +This work is funded by grant [[https://projectreporter.nih.gov/project_info_description.cfm?aid=8931767|U24 OH010873]] from NIOSH, NIH.