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Publications, posters and presentations
2018
Horwitz, R, Ioannidis, J, Silverstein, J, Sim, I, Schneider, J.
The future of evidence synthesis: Incorporating heterogeneous, non-traditional, and patient-specific evidence towards evidence-based precision medicine. AMIA 2018 Informatics Summit. 2018 Mar 13. (
presentation)
Tajgardoon, M, Wagner, MM, Zimmerman, RK.
A novel representation of vaccine efficacy trial datasets for use in computer simulation of vaccination policy. AMIA 2018 Informatics Summit. 2018 Mar 14. (
paper)
Tajgardoon, M, Visweswaran, S. Patient-specific explanations from risk prediction models. AMIA 2018 Clinical Informatics Conference. Scottsdale, AZ. 2018 May 9. [presentation]
2017
Lustgarten, JL, Balasubramanian, JB, Visweswaran, S, Gopalakrishnan, V.
Learning parsimonious classification rules from gene expression data using Bayesian networks with local structure. Data. 2017 Mar;2(1). (
abstract) (
paper)
King, AJ, Hochheiser, H, Visweswaran, S, Clermont, G, Cooper, GF.
Eye-tracking for clinical decision support: A method to capture automatically what physicians are viewing in the EMR. In: AMIA Joint Summits Translational Science Proceedings. 2017 Mar 27-30; 2017:512-21. (
abstract) (
paper) (
Awarded First Place in the Student Paper Competition at the AMIA Joint Summits Clinical Research Informatics, 2017)
Bhavnani, SK, Chen, T, Ayyaswamy, A, Visweswaran, S, Bellala, G, Divekar, R, Bassler, KE.
Enabling comprehension of patient subgroups and characteristics in large bipartite networks: Implications for precision medicine. In: AMIA Joint Summits Translational Science Proceedings. 2017 Mar 27-30; 2017:21-29. PMID: (
abstract) (
paper)
Culbertson, A, Goel, S, Madden, M, Safaeinili, N, Jackson, KL, Carton, T, Waitman, R, Liu, M, Krishnamurthy, A, Hall, L, Cappella, N, Visweswaran, S, Becich, MJ, Applegate, R, Bernstam, E, Rothman, R, Matheny, M, Lipori, G, Bian, J, Hogan, W, Bell, D, Martin, A, Grannis, S, Klann, J, Sutphen, R, O'Hara, AB, Kho, A.
The building blocks of interoperability: A multisite analysis of patient demographic attributes available for matching. Applied Clinical Informatics. 2017 Apr 5;8(2):322-336. (
abstract) (
paper)
Castro, SM, Tseytlin, E, Medvedeva, O, Mitchell, K, Visweswaran, S, Bekhuis, T, Jacobson, RS.
Automated annotation and classification of BI-RADS assessment from radiology reports. Journal of Biomedical Informatics. 2017 May;69:177-187. (
abstract) (
paper)
Bhavnani SK, Dang B, Kilaru V, Caro M, Visweswaran S, Saade G, Smith AK, Menon R.
Methylation differences reveal heterogeneity in preterm pathophysiology: results from bipartite network analyses. Journal of Perinatal Medicine. 2017 Jun 30. (
abstract) (
paper)
Strobl, EV, Visweswaran, S, Spirtes, PL. Fast causal inference with non-random missingness by test-wise deletion. In: 2017 ACM SIGKDD Workshop on Causal Discovery. 2017 Aug 14.
Tenenbaum, JD, Bhuvaneshwar, K, Gagliardi, JP, Hollis, KF, Jia, P, Ma, L, Nagarajan, R, Rakesh, G, Subbian, V, Visweswaran, S, Zhao, Z, Rozenblit, L.
Translational bioinformatics in mental health: Open access data sources and computational biomarker discovery. Briefings in Bioinformatics. 2017 Nov 27. PMID: (
abstract) (
paper)
Strobl, EV, Visweswaran, S, Spirtes, PL. Fast causal inference with non-random missingness by test-wise deletion. International Journal of Data Science and Analytics. (in press)
Strobl, EV, Zhang, K, Visweswaran, S.
Approximate kernel-based conditional independence tests for fast non-parametric causal discovery. arXiv preprint arXiv:1702.03877, 2017. (
abstract & paper) [preprint]
Strobl, EV, Visweswaran, S, Spirtes, PL.
Fast causal inference with non-random missingness by test-wise deletion. arXiv preprint arXiv:1705.09031, 2017. (
abstract & paper) [preprint]
Khatri, S, Shirey, W, Tajardoon, M, Visweswaran, S. Patient-specific explanations of risk predictions in community acquired pneumonia. In: AMIA Annual Symposium Proceedings. 2017 Nov 6. [poster]
Calzoni, L, Clermont, G, Cooper, GF, Visweswaran, S, Hochheiser, H.
Exploring novel graphical representations of clinical data in a learning EMR. In: AMIA Annual Symposium Proceedings. 2017 Nov 7. (
abstract) [poster]
Strobl, EV, Visweswaran, S, Spirtes, PL. Fast causal inference with non-random missingness by test-wise deletion. In: 2017 ACM SIGKDD Workshop on Causal Discovery. 2017 Aug 14. [presentation]
Bhavnani, SK, Ayyaswamy, A, Chen, T, Visweswaran, S, Bellala, G, Kevin E. Bassler, KE.
Vicinity exploration: Enabling user-driven visual search of multiple machine learning models for precision medicine. System demonstration; In: Symposium of the American Medical Informatics Association. 2017 Nov 7. (
abstract) [presentation]
2016
Strobl, EV, Visweswaran, S.
Markov boundary discovery with ridge regularized linear models. Journal of Causal Inference. 2016 Mar; 4(1):31-48. (
abstract) (
paper)
Pineda, AL, Ogoe, HA, Balasubramanian, JB, Escareño, CR, Visweswaran, S, Herman, JG, Gopalakrishnan, V.
On predicting lung cancer subtypes using ‘omic’data from tumor and tumor-adjacent histologically-normal tissue. BMC Cancer. 2016 Mar 4;16(1):184. (
abstract) (
paper)
Tenenbaum, JD, Avillach, P, Benham-Hutchins, M, Breitenstein, MK, Crowgey, EL, Hoffman, MA, Jiang, X, Madhavan, S, Mattison, JE, Radhakrishnan, N, Ray, B, Shin, D, Visweswaran, S, Zhao, Z, Freimuth, RR.
An informatics research agenda to support precision medicine: 7 key areas. Journal of the American Medical Informatics Association. 2016 Jul;23(4):791-5. (
abstract) (
paper)
Hauskrecht, M, Batal, I, Hong, C, Cooper, GF, Visweswaran, S, Clermont, G.
Outlier-based detection of unusual patient-management actions: an ICU study. Journal of Biomedical Informatics. 2016 Dec;64:211-221. (
abstract) (
paper)
Strobl, EV, Spirtes, PL, Visweswaran, S.
Estimating and controlling the False Discovery Rate for the PC algorithm using edge-specific p-values. arXiv preprint arXiv:1607.03975, 2016. (
abstract & paper) [preprint]
Bhavnani SK, Dang, B, Chen, T, Bassler, K, Divekar, R, Visweswaran, S.
Replicability of co-occurring comorbidities: Implications for precision medicine. In: AMIA Joint Summits Translational Science Proceedings. 2016 Mar. (
abstract) [poster]
Visweswaran, S, Tenenbaum, J, Gouripeddi, R. Secondary use of data for research - EHR, omics and environmental data. In: AMIA Joint Summits Translational Science Proceedings. 2016 Mar 22. [presentation]
2015
Amin, W, Borromeo, C, Saul, M, Becich, MJ, Visweswaran, S.
Informatics synergies between PaTH and ACT networks. In: AMIA Joint Summits Translational Science Proceedings. 2015 Mar 25; 2015:294-5. (
abstract) [poster]